Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs2011770 | chr3:139262295 | A/C | 4.84E-6 | 486 | 15.93 | 16.93 | 14.53 | KM Plot |
| THCA | rs201177322 | chr3:56544021 | TG/T | 0.000163 | 489 | 16.65 | 13.1 | 9.47 | KM Plot |
| THCA | rs2011981 | chr1:41540853 | A/T | 3.61E-12 | 489 | 17.7 | 17.73 | 14.93 | KM Plot |
| THCA | rs2011982 | chr1:41540861 | T/C | 3.61E-12 | 489 | 17.7 | 17.75 | 14.93 | KM Plot |
| THCA | rs201374650 | chr1:91743063 | GGT/G | 7.16E-8 | 472 | 19.32 | 17.03 | 15.3 | KM Plot |
| THCA | rs2013925 | chr1:41560291 | A/G | 2.82E-7 | 489 | 17.47 | 17.77 | 14.93 | KM Plot |
| THCA | rs201396807 | chr7:76416777 | G/A | 3.12E-8 | 476 | 15.33 | 16.95 | 15.67 | KM Plot |
| THCA | rs201404066 | chr2:29075167 | T/A | 8.83E-5 | 477 | 14.3 | 16.67 | 15.97 | KM Plot |
| THCA | rs2015775 | chr13:108842155 | C/A | 2.36E-5 | 468 | 20.08 | 16.97 | 15.33 | KM Plot |
| THCA | rs201589162 | chr16:20781859 | A/G | 4.2E-10 | 489 | 15.97 | 14.9 | 14.3 | KM Plot |
| THCA | rs2015919 | chr2:55218026 | A/T | 0.000194 | 488 | 17.83 | 15.23 | 14.27 | KM Plot |
| THCA | rs201684737 | chr3:53960787 | T/C | 0 | 485 | 15.83 | 17.6 | 6.03 | KM Plot |
| THCA | rs201712284 | chr6:24422269 | CAG/C | 5.55E-15 | 488 | 16.37 | 14.85 | 11.07 | KM Plot |
| THCA | rs201805093 | chr16:50089058 | ATC/A | 0.000232 | 486 | 15.2 | 18.15 | 5.37 | KM Plot |
| THCA | rs201881632 | chr16:20768968 | G/T | 3.38E-5 | 490 | 16.37 | 14.63 | 17.65 | KM Plot |